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Bacterial Genomics
The study of the morphological, physiological, and evolutionary aspects of the bacterial genome is referred to as bacterial genomics. This subdisciplinary field aids in understanding how genes are assembled into genomes. Further, bacterial or microbial genomics has helped researchers in understanding the pathogenicity of bacteria and other microbes.
Transformation Experiment in Bacteria
In the discovery of genetic material, the experiment conducted by Frederick Griffith on Streptococcus pneumonia proved to be a stepping stone.
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The DNA molecule that exists in a circular shape and is smaller in size which is capable of its replication is called Plasmids. In other words, it is called extra-chromosomal plasmid DNA. Vectors are the molecule which is capable of carrying genetic material which can be transferred into another cell and further carry out replication and expression. Plasmids can act as vectors.
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- 1) A. What is the difference between a repressible vs, an inducible operon? B. Using diagrams and words, describe how the Lac Operon is regulated by different levels of lactose and glucose. Be sure to show what’s happening at the molecular level, including the roles of lactose, glucose the repressor protein, cAMP and CAP.III. Answer the following: 1. What are the main elements of the lac operon and their functions? 2. Distinguish among inducible, repressible, and constitutive gene operons.Answer the following questions: 1. Given the following genotypes, explain how the mutation (identified by a () superscript will affect E. coli grown in lactose medium. Will the lac operon be on or off? Will there be a complete set of gene products from the loc operon? What will be the implication of the missing gene product, if ever? Will the cell be able to survive in the lactose medium or not? a. p' oE Y b. p'o Y d. po v
- Consider the lac operon of E. coli. Specifically, explain the following: a. Describe the overall chromosomal structure/organization of the operon, indicating the location and function of the regulatory regions and the structural genes. b. Is lac a catabolic or anabolic pathway? Explain. Is the operon inducible or repressible? Explain. c. Describe the mechanisms involved in negative control & positive controla. What is the function of operons in bacterial gene regulation? b. Describe how a bacterial operon can be regulated by repressible proteins (such as the tryptophan operon). Include in your description both the “on” and “off” states of the operon. Key elements of your diagram should include: Co-repressor, Genes, mRNA, Operator, Operon, Promoter, Repressor, RNA polymerase.12a. In what condition is the LacZ gene transcribed? ANSWER (in one sentence) 12b. Fill in the following table about the Lac operon (LacZ gene) Environmental Condition + Glucose and + Lactose Glucose and + Lactose - Glucose and - Lactose + Glucose and - Lactose Q 2 Body" W #3 E D Which proteins bind to the LacZ promoter? ANSWER ANSWER ANSWER ANSWER $ 4 A R F B % 5 I T MacBook Pro A U 6 G Y & 7 H Is LacZ transcribed? (Yes or No) ANSWER ANSWER ANSWER ANSWER |||| U 8 K
- 24. What statement is NOT true regarding transcription attenuation of amino acid biosynthetic operons? 1.The leader peptide will contain multiple instances of the amino acid produced by the operon. 2.Transcription attenuation will always be accompanied by other positive or negative regulatory mechanisms. 3.Trancription will be reduced under conditions where concentration of the amino acid produced by the operon is high. 4.Synthesis of the leader peptide depends on the concentration of the aminoacylated tRNA, not the amino acid directly. 5.All of these statements are true.1. A)Explain the mechanism by which the lac operon is sensitive to glucose levels (presence and absence of glucose). B)If glucose levels in the cell are high and lactose is available from the environment, what is the status of transcription of the lac operon genes? Explain your answer from both an evolutionary perspective and in terms of negative and positive regulation of the operon?B. A researcher was trying to determine whether two molecules (A and B) were corepressors or inducers in their respective operon systems. Data was collected regarding the levels of protein and the amount of gene transcription for the genes in their respective operons. The data is shown below: Level of protein High Transcription of gene 1 Transcription of gene 2 Molecule A Low Low High High low High High Low Molecule B High low Low a) Dete b) Identify which system resembles the lac operon system and which resembles the trp operons system nine whether molecule A and molecule B are ducers or corepressors. Justify your answers.
- Like the lac operon, the hexose operon is controlled by a separate regulatory protein under the control of its own promoter (see the schematic of the operon below). The hexose regulatory protein is sensitive to fatty acyl CoA levels. When all hexose fuel sources are depleted, the bacteria switch to lipid metabolism and fatty acyl CoA levels increase. This turns expression of the hexose operon off. +1 +1 Regulatory Gene P regulator Hexose Operon Genes operon regulator promoter operon promoter e. The regulatory protein that controls expression of the hexose operons is a transcriptional ACTIVTOR or REPRESSOR (circle one).Like the lac operon, the hexose operon is controlled by a separate regulatory protein under the control of its own promoter (see the schematic of the operon below). The hexose regulatory protein is sensitive to fatty acyl CoA levels. When all hexose fuel sources are depleted, the bacteria switch to lipid metabolism and fatty acyl CoA levels increase. This turns expression of the hexose operon off. +1 +1 Regulatory Gene Pregulator P operon Hexose Operon Genes regulator promoter operon promoter4) Suppose you have an E. coli in which the gene that codes for the lac repressor protein has been mutated in such a way that the protein produced can bind to both lactose and DNA (at its specific binding site in the lac operon promoter) simultaneously. What effect, if any, would this have on regulation of expression of the lac operon? Briefly (1 sentence) explain why you would predict the effect or lack of effect this mutation would have.